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Table 3 Results of the GWA analyses for SNPs that differed between the comparison groups at p < 0.0001: minor allele frequency in LL cases

From: A search for non-chromosome 6 susceptibility loci contributing to rheumatoid arthritis

SNP LL cases HH cases LL controls Physically closes gene
LL cases vs. HH cases
   rs10498105a 0.306 0.66 - EPHA4
   rs2398966 0.111 0.469 - AC012154.16
   rs2293004 0.361 0.699 - AADAC
   rs7664880 0.361 0.704 - AC096566.2
   rs1845344 0.389 0.727 - MAD2L1
   rs7447161 0.083 0.396 - FER
   rs1350309 0.028 0.298 - AC019176.4
   rs3731239 0.333 0.687 - CDKN2A
   rs10813797 0.278 0.625 - ACO1
   rs7865082 0.361 0.713 - DDX58
   rs2793471 0.222 0.564 - AL135933.11
   rs2611279 0.111 0.426 - SLC6A15
   rs7967594 0.111 0.426 - SLC6A15
   rs2148443 0.139 0.497 - TMFRSF19
   rs2567506 0.111 0.429 - SLC39A11
   rs742605 0.111 0.436 - TRIB3
   rs5771716 0.389 0.724 - FAM19A5
LL cases vs. LL cases
   rs11684785 0.094 -b 0.423 TMEM163
   rs10498105 0.306 - 0.686 EPHA4
   rs2398966 0.111 - 0.413 AC012154.16
   rs7664880 0.361 - 0.684 AC096566.2
   rs173948 0.222 - 0.548 TRIO
   rs42404 0.083 - 0.386 TRIO
   rs890937 0.083 - 0.377 TRIO
   rs358753 0.111 - 0.421 TRIO
   rs27761 0.139 - 0.452 TRIO
   rs27114 0.111 - 0.442 TRIO
   rs40066 0.389 - 0.707 FBXL17
   rs40065 0.389 - 0.707 FBXL17
   rs7447161 0.083 - 0.376 FER
   rs921634 0.028 - 0.299 PKD1L1
   rs1324208 0.389 - 0.719 SMARCA2
   rs1396553 0.417 - 0.747 SMC3
   rs2793471 0.222 - 0.584 AL135933.11
   rs6539845 0.139 - 0.452 SLC6A15
   rs11116408 0.139 - 0.457 SLC6A15
   rs2611279 0.111 - 0.446 SLC6A15
   rs7967594 0.111 - 0.447 SLC6A15
   rs1380412 0.111 - 0.438 SLC6A15
   rs742605 0.111 - 0.419 TRIB3
  1. aSNPs common to both lists are boldface.
  2. b-, not applicable.