Genome-wide discovery of maternal effect variants

BMC Proceedings

Table 4 Suggestive associations with height

SNP^a	Gene	Chrom.	Coordinate (bp)	Λ^b, OMG	Λ^b, MMG	Λ^b, CMMG	MAF^c	N, typed^d
Sorted by OMG
rs2213883	MPZL1	1	138,961,675	23.8587	0.8336	0.6778	0.201	6836
rs12129308	MCOLN2	1	83,533,561	20.9235	10.6998	3.0661	0.324	6827
rs536609	MCOLN2	1	83,540,695	20.8421	11.3493	3.4800	0.325	6786
rs597630	MCOLN2	1	83,529,929	20.7087	10.5223	2.9965	0.325	6852
rs600924	MCOLN2	1	83,536,001	20.6884	10.5223	3.0128	0.325	6850
Sorted by MMG
rs11166947	TRAPPC9	8	136,376,532	2.3202	24.9813	22.8014	0.322	6271
rs1426022		18	16,635,128	3.7962	22.6984	18.9815	0.468	6675
rs12709669		18	16,653,893	3.3445	22.6099	19.2853	0.467	6838
rs756228	TRAPPC9	8	141,138,313	2.5298	21.1932	18.6637	0.31	6841
rs7096364		10	107,344,433	1.8847	21.1904	19.3774	0.112	6849
Sorted by CMMG
rs11166947	TRAPPC9	8	136,376,532	2.3202	24.9813	22.8014	0.322	6271
rs7607015		2	81,548,367	0.3632	21.1517	22.1813	0.077	6670
rs17198973		4	178,164,796	0.3836	16.228	20.2233	0.401	6848
rs11048399	RASSF8	12	25,992,998	0.9614	20.2601	19.5277	0.042	6787
rs1195768		10	107,348,297	1.6268	20.201	18.6879	0.118	6553

^aLikelihood ratio test statistic (Λ = 2 times the difference in log likelihood of test model and its null)
^bAll MG tests have 1 df
^cMAF = minor allele frequency.
^dN, typed = number of genotyped individuals (before imputation).

ISSN: 1753-6561