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Table 2 SNPs on chromosome 9 identified by FamCC and FBAT with p-values < 0.0001

From: Comparison of a unified analysis approach for family and unrelated samples with the transmission-disequilibrium test to study associations of hypertension in the Framingham Heart Study

   

p-valuea

 

SNP

Position (bp)

Allele Freq.

FamCC Unrelated subsample

FamCC Family sample

FBAT Family sample

Gene

Hypertension

rs278714

75348574

0.06

0.01

7.24 × 10 -5

0.30

373 kb to ANXA1

rs368408

75355214

0.06

0.01

6.26 × 10 -5

0.26

380 kb to ANXA1

rs17761685

102914240

0.20

0.08

4.71 × 10 -5

0.40

PRG-3

rs17829436

102932851

0.18

0.19

4.65 × 10 -5

0.46

PRG-3

rs17829926

102944699

0.19

0.12

2.12 × 10 -5

0.54

PRG-3

rs4278208

102969600

0.19

0.11

1.02 × 10 -5

0.52

PRG-3

rs2984524

74179463

0.48

0.20

0.30

6.90 × 10 -5

10 kb to ZFAND5

SBP

rs4979219

109463841

0.16

8.52 × 10 -5

0.02

0.38

172 kb to KLF4

rs10961684

14718052

0.25

0.25

6.11 × 10 -5

0.75

5 kb to CER1

rs2583845

132603386

0.29

0.15

0.16

8.50 × 10 -5

ABL1

DBP

rs1547761

16908196

0.30

0.08

3.08 × 10 -5 a

5.00 × 10-3

40 kb to BNC2

rs7859491

121679109

0.10

0.70

0.10

5.70 × 10 -5

500 kb to DBC1, CDK5RAP2

rs3934946

121680170

0.10

0.71

0.06

2.70 × 10 -5

500 kb to DBC1, CDK5RAP2

rs41332646

121688986

0.10

0.90

0.04

4.10 × 10 -5

500 kb to DBC1, CDK5RAP2

rs10984755

121691216

0.10

0.91

0.04

3.00 × 10 -5

500 kb to DBC1, CDK5RAP2

rs10984756

121691605

0.10

0.90

0.07

2.80 × 10 -5

500 kb to DBC1, CDK5RAP2

rs10984758

121691719

0.10

0.73

0.04

2.40 × 10 -5

500 kb to DBC1, CDK5RAP2

  1. aBold font indicates p-value <10-4.
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BMC Proceedings

ISSN: 1753-6561

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