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Table 2 A list of significant untyped SNPs. The significant untyped SNPs that are not located with 2 Mb of any significant typed SNP.

From: Application of imputation methods to the analysis of rheumatoid arthritis data in genome-wide association studies

    

log10 (BF) or - log10 (p) (rank)b

Chr.

RS Number

Distancea (MB)

Gene

BIMBAM

IMPUTE

BIMBAM

15

rs4886414

41.38

SCAMP5

4.07(84) c

5.53(225)

6.35(24)

15

rs8042558

41.39

PPCDC

4.06(85)

5.53(226)

6.33(27)

2

rs10210993

37.45

MGAT5

3.88(99)

5.13(356)

Not Tested

2

rs10170556

37.41

MGAT5

3.82(116)

5.15(352)

Not Tested

2

rs2359965

35.03

KLF7

3.57(183)

6.17(102)

Not Tested

2

rs1263623

35.04

KLF7

3.57(179)

6.18(100)

Not Tested

2

rs1263624

35.03

KLF7

3.57(184)

5.13(358)

Not Tested

2

rs2244166

35.03

KLF7

3.55(189)

5.78(176)

Not Tested

2

rs2244399

35.03

KLF7

3.54(195)

5.81(173)

Not Tested

1

rs9434795

3.13

PLEKHG5

0.94(20368)

9.94(6)

Not Tested

21

rs2297248

2

USP25

0.13(162921)

0.02(1817334)

9.04(7)

11

rs7926700

14.32

DYNC2H1

-0.07(518517)

0.72(500481)

7.23(14)

20

rs6017239

4.99

TOX2

-0.08(575887)

0.05(1710287)

9.56(3)

  1. aThe distance to the closet typed SNP that was significant.
  2. bRank is among all untyped SNPs after excluding SNPs on chromosome 6.
  3. cBold font indicates significant SNPs.