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Table 3 Significant SNPs from the SNP association tests

From: Genome-wide analysis of haplotype interaction for the data from the North American Rheumatoid Arthritis Consortium

dbSNP ID

Model

p-Value

Chr

Chr position

Allele

Strand

Gene symbol

Functional class

rs2395175 a

codominant

2.46 × 10-112

6

32,513,004

A/G

+

  

rs660895

codominant

5.05 × 10-107

6

32,685,358

A/G

+

  

rs6910071

codominant

6.65 × 10-94

6

32,390,832

A/G

+

C6orf10

intron

rs2395163

codominant

1.10 × 10-90

6

32,495,787

C/T

+

  

rs3763312

codominant

1.87 × 10-86

6

32,484,326

A/G

+

BTNL2

locus

rs3763309

codominant

2.06 × 10-86

6

32,483,951

A/C

+

BTNL2

locus

rs9275224

codominant

5.96 × 10-86

6

32,767,856

A/G

+

  

rs6457617

codominant

6.83 × 10-75

6

32,771,829

C/T

+

  

rs9271568

codominant

1.44 × 10-66

6

32,698,441

A/G

+

  

rs2395185

codominant

8.68 × 10-65

6

32,541,145

G/T

+

  

rs660895

additive

1.40 × 10-62

6

32,685,358

A/G

+

  

rs9271568

additive

5.33 × 10-56

6

32,698,441

A/G

+

  

rs2395185

additive

3.30 × 10-55

6

32,541,145

G/T

+

  

rs6910071

additive

7.28 × 10-55

6

32,390,832

A/G

+

C6orf10

intron

rs2395163

additive

2.58 × 10-54

6

32,495,787

C/T

+

  

rs2516049

additive

4.74 × 10-53

6

32,678,378

A/G

-

  

rs477515

additive

1.25 × 10-52

6

32,677,669

C/T

-

  

rs3763309

additive

4.34 × 10-52

6

32,483,951

A/C

+

BTNL2

locus

rs3763312

additive

5.29 × 10-51

6

32,484,326

A/G

+

BTNL2

locus

rs2395175

additive

6.53 × 10-50

6

32,513,004

A/G

+

  
  1. aBold text indicates that the SNPs are selected by both the additive and codominant model.