Table 2 LOD values for the two-sided alternative
From: Armitage's trend test for genome-wide association analysis: one-sided or two-sided?
SNPa | Z 2 b |
|
|
| F d |
|---|---|---|---|---|---|
rs4078292 | 6.14 | 5.23 | 0.91 d | 6.96 | 0.1958 |
rs12380341 | 11.61 | 10.01 | 0.36 | 13.45 | 0.1722 |
rs16929545 | 7.22 | 6.71 | 1.01 | 7.62 | 0.0850 |
*rs1953126 | 7.56 | 7.53 | 5.05 | 5.44 | 0.0037 f |
*rs10985073 | 6.98 | 6.87 | 5.63 | 4.19 | 0.0173 |
*rs881375 | 7.64 | 7.63 | 4.81 | 5.71 | 0.0020 |
*rs3761847 | 7.91 | 7.75 | 5.92 | 5.03 | 0.0230 |
*rs10760130 | 7.42 | 7.30 | 6.03 | 4.40 | 0.0190 |
*rs2900180 | 8.21 | 8.19 | 5.20 | 6.09 | 0.0022 |
rs872863 | 15.65 | 14.78 | 1.51 | 15.11 | 0.0617 |
rs888229 | 6.17 | 5.27 | 1.09 | 6.10 | 0.1914 |
rs11185665 | 7.54 | 6.48 | 0.32 | 9.68 | 0.1817 |
rs11792145 | 8.58 | 6.53 | 0.04 | 12.24 | 0.3488 |
c
- a Asterisks indicates SNPs are located on TRAF1-C5.
- b Z2 is the Chi-square test comparing the frequencies of the minor allele in the two groups
- c Subscripts A1, A2 and A3 denote test (1) with score systems 1, 2, and 3, respectively
- d F is the Wright's coefficient of inbreeding
- e Bold font indicates
is significantly smaller than 
and 
. - f Italic font indicates F value is smaller than 0.03.
is significantly smaller than 
and 
.