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Table 2 Mean (SD) differencea in -log10(p-value) based on a test of association using complete data and a test of association using the imputed data

From: Assessment of genotype imputation methods

 

Scenario 1

Scenario 2

IMPUTE

0.352 (1.26)

0.078 (0.493)

MACH

0.363 (1.27)

0.093 (0.543)

PLINK

0.509 (1.55)

0.054 (0.617)

fastPHASE

0.483 (1.70)

0.046 (0.633)

  1. aDifference = (imputed data -log10(p-value)) - (complete data -log10(p-value))