Table 1 Summary of the best models obtained using GMDR algorithm for the quantitative trait RFUW (IgM)a
From: Evaluating epistatic interaction signals in complex traits using quantitative traits
No. loci | ||||
|---|---|---|---|---|
1 | 2 | 3 | 4 | |
SNPs in best model | rs2156875 | rs1517352 | rs11203368 | rs3024912 |
rs3024896 | rs6683201 | rs1517352 | ||
rs3789607 | rs4555370 | |||
rs231726 | ||||
Chromosome | 6 | 6 | 1 | 2 |
Gene | HLA-B | CTLA4 | PADI4, PTPN22 | STAT4, CTLA4 |
Predictive accuracy | 0.5739 | 0.5577 | 0.5069 | 0.5396 |
Cross-validation consistency | 10 | 6 | 5 | 7 |
Sign test p-value | 0.017 | 0.001 | 0.377 | 0.0547 |