Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals

Table 1 Percent of genotypes correctly imputed in each scenario, considering alternative low-density genotyping strategies^a.

	S1	S2
Training females – all genotypes imputed	69
Prediction – all genotypes imputed	64	68
Prediction – all genotypes imputed, except every 10 Mb	65	73
Prediction – all genotypes imputed, except every 5 Mb	65	75
Prediction – all genotypes imputed, except every 2 Mb	68	78

^aThe number of SNPs genotyped was 55 for 10 Mb spacing, 105 for 5 Mb spacing and 251 for 2 Mb spacing.

ISSN: 1753-6561