Table 1 Estimated regression coefficients and approximate standard error for the most significant markers in of the second PLSR model. The highlighted cell contain a regression coefficient which was considered most significant, the other cells contain the less significant regression coefficients.
From: Partial least square regression applied to the QTLMAS 2010 dataset
marker | Â | Cont. trait | Discr. trait | ||
|---|---|---|---|---|---|
| Â | MAF |
|
|
|
|
Chrom. 1 | |||||
156 | 0.46 | 2.9920 | 0.0817 | 0.0612 | 0.0405 |
159 | 0.39 | -2.3459 | 0.0479 | -0.0654 | 0.0442 |
494 | 0.48 | 0.3242 | 0.0010 | -0.0369 | 0.0148 |
495 | 0.06 | -1.4611 | 0.0046 | 0.0672 | 0.0116 |
1058 | 0.31 | 4.1433 | 0.1355 | 0.0426 | 0.0170 |
1087 | 0.45 | -0.4640 | 0.0020 | -0.0397 | 0.0170 |
1621 | 0.41 | 0.2338 | 0.0005 | 0.0108 | 0.0012 |
1976 | 0.29 | -0.0818 | 0.0001 | 0.0336 | 0.0102 |
Chrom. 2 | |||||
1977 | 0.37 | -0.3898 | 0.0013 | -0.0924 | 0.0866 |
2340 | 0.42 | 2.8491 | 0.0724 | 0.0598 | 0.0378 |
2481 | 0.31 | 1.0574 | 0.0088 | 0.0434 | 0.0175 |
2864 | 0.27 | 1.2254 | 0.0107 | 0.0320 | 0.0087 |
3242 | 0.09 | 0.3485 | 0.0004 | -0.0043 | 0.0001 |
3274 | 0.31 | 1.3028 | 0.0134 | 0.0867 | 0.0703 |
4034 | 0.17 | 1.5167 | 0.0119 | 0.0572 | 0.0200 |
Chrom. 3 | |||||
4035 | 0.31 | -1.6002 | 0.0200 | -0.0150 | 0.0021 |
4384 | 0.37 | -1.3395 | 0.0153 | -0.0650 | 0.0427 |
4519 | 0.40 | -0.1875 | 0.0003 | -0.0489 | 0.0249 |
4832 | 0.47 | -1.7533 | 0.0281 | -0.0576 | 0.0360 |
5447 | 0.45 | 1.9137 | 0.0333 | 0.0062 | 0.0004 |
5695 | 0.46 | -1.2392 | 0.0140 | 0.0278 | 0.0084 |
5811 | 0.38 | -2.1743 | 0.0407 | -0.0930 | 0.0883 |
6082 | 0.28 | 0.6369 | 0.0030 | 0.0123 | 0.0013 |
Chrom. 4 | |||||
6083 | 0.02 | 3.1419 | 0.0078 | 0.0192 | 0.0003 |
6671 | 0.46 | -1.4765 | 0.0199 | 0.0126 | 0.0017 |
6995 | 0.06 | 5.3177 | 0.0585 | 0.1009 | 0.0250 |
7099 | 0.41 | -0.9055 | 0.0073 | -0.0352 | 0.0131 |
7209 | 0.46 | -0.3541 | 0.0011 | 0.0010 | 0.0000 |
7386 | 0.39 | -0.4365 | 0.0017 | 0.0109 | 0.0012 |
7433 | 0.46 | 0.4793 | 0.0021 | 0.0590 | 0.0377 |
7697 | 0.37 | -0.1112 | 0.0001 | 0.0500 | 0.0252 |
8073 | 0.22 | 2.1894 | 0.0300 | 0.0117 | 0.0010 |
Chrom. 5 | |||||
8324 | 0.44 | 1.5840 | 0.0226 | -0.0076 | 0.0006 |
8528 | 0.39 | 1.1567 | 0.0117 | -0.0035 | 0.0001 |
8538 | 0.42 | 1.0233 | 0.0093 | 0.0027 | 0.0001 |
8890 | 0.35 | 0.4145 | 0.0014 | 0.0404 | 0.0162 |
8920 | 0.21 | -0.1872 | 0.0002 | 0.0565 | 0.0233 |
9514 | 0.13 | -2.6520 | 0.0283 | 0.0186 | 0.0017 |
9523 | 0.44 | 1.2587 | 0.0143 | 0.0274 | 0.0080 |
9744 | 0.21 | -1.1246 | 0.0078 | 0.0487 | 0.0173 |
9754 | 0.16 | -0.805510 | 0.0032 | -0.0094 | 0.0005 |
