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Table 1 Summary of Gmelina arborea transcript sequencing and functional annotation

From: A drought stress transcriptome profiling as the first genomic resource for white teak - Gamhar - (Gmelina arborea Roxb) and related species

  

LIBRARY

Leaves

Roots

TOTAL

ASSEMBLY

 

Input sequences

401.181

87.078

488.259

  

Clean sequences

340.654 (85%)

74.480 (86%)

415.134 (85%)

  

Singleton

6.045

4.616

10.661

  

Contigs

5.696

4.832

10.528

  

Size range (average) (bp)

100-1731 (413)

97-2197 (499)

97-2197 (456)

  

Depth coverage (fold)

59

14

38

Annotation

I

Blast Hit

4.185 (73%)

2.623 (54%)

6.808 (65%)

  

No Blast hi

1.511

2.209

3.720

 

II

GO annotated contigs

3.274 (57%)

1.743 (36%)

5.017 (48%)

  

GO terms

20.965

10.474

31.439

  

Contigs with Enzime Codes

1.252

509

1.761

 

III

KEGG pathway assigned contigs

738 (13%)

292 (6%)

1.030 (10%)

  1. a Percentages are related to total number of contigs