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Table 1 Detected causal variants categorized by minor allele frequency and strength of effect

From: Case-control association testing by graphical modeling for the Genetic Analysis Workshop 17 mini-exome sequence data

Minor allele frequency

β < 0.5

β < 0.5

<0.005

C10S3110, SIRT1 (4)

C1S9445, PIK3C2B (1)

C3S4873, BCHE (2)

C6S2981, VEGFA (1)

C9S376, VLDLR (1)

C10S3048, SIRT1 (1)

C10S3050, SIRT1 (1)

≥0.005

C18S2492, PIK3C3 (1)

C1S6533, ARNT (2)

C13S522, FLT1 (23)

C13S523, FLT1 (25)

  1. Causal variants detected out of 50 replicates. Numbers in parentheses denote the number of times (replicates) a particular variant was found. For reference, there were 7 simulated variants in the common and strong category, 57 in the rare and strong category, 81 in the rare and weak category, and 17 in the common and weak category.
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BMC Proceedings

ISSN: 1753-6561

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