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Table 4 Candidate genes and variants

From: Identity-by-descent filtering as a tool for the identification of disease alleles in exome sequence data from distant relatives

IBD analysis

FBAT analysis

Gene

Number of phenotype files

Marker

MAF

Chromosome

Position

Gene

SNP type

Allele

FBAT p-value

APOB

87

C2S192

0.079627

2

21078786

APOB

Nonsynonymous

T

0.015

APOB

87

C2S193

0.041607

2

21078990

APOB

Nonsynonymous

G

0.047

TTLL4

67

C2S6005

0.033716

2

219311896

TTLL4

Nonsynonymous

A

0.035

ACCN4

68

C2S6142

0.008608

2

220105317

ACCN4

Nonsynonymous

A

0.031

COL6A3

72

C2S7528

0.078192

2

237926760

COL6A3

Nonsynonymous

A

0.029

TG

88

C8S4237

0.083931

8

133969677

TG

Nonsynonymous

A

0.046

TG

88

C8S4289

0.01363

8

133979643

TG

Nonsynonymous

A

0.030

TG

88

C8S4456

0.040172

8

134022858

TG

Nonsynonymous

G

0.014

TG

88

C8S4457

0.040172

8

134022922

TG

Nonsynonymous

C

0.014

TG

88

C8S4475

0.012195

8

134030339

TG

Nonsynonymous

G

0.033

TG

88

C8S4540

0.096844

8

134050942

TG

Nonsynonymous

C

0.041

TG

88

C8S4594

0.02726

8

134093337

TG

Nonsynonymous

G

0.044