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Table 1 MAF and LD reduction

From: Linear models for breeding values prediction in haplotype-assisted selection - an analysis of QTL-MAS Workshop 2011 Data

chromosome:

1

2

3

4

5

all markers

1998

1998

1998

1998

1998

markers with MAF>0.05

1206

1189

1249

1288

1167

markers with MAF>0.05 and r2=1

211

201

150

166

216