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Table 2 Subsets of SNPs after MAF and LD reduction

From: Linear models for breeding values prediction in haplotype-assisted selection - an analysis of QTL-MAS Workshop 2011 Data

chromosome

subset of SNPs

 

all

2-SNP

3-SNP

4-SNP

5-SNP

6-SNP

7-SNP

8-SNP

1

92

75

12

3

1

-

-

1

2

87

67

16

3

-

-

1

-

3

65

52

8

3

2

-

-

-

4

73

57

12

4

-

-

-

-

5

92

71

14

4

2

1

-

-

TOTAL

409

322

62

17

5

1

1

1

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BMC Proceedings

ISSN: 1753-6561

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