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Table 2 Comparison of QTL mapping results

From: Comparison of the analyses of the XVth QTLMAS common dataset II: QTL analysis

Method

Authors

QTL detected

False positives

Missing QTL (a)

Mean distance to the QTL (cM)

GBLUP

Zeng

5

0

3,5,8

1.32

BayesB

Zeng

6

3

7,8

1.21

BayesC

Dashab

7

2

8

0.96

BayesCÏ€

Schurink

5

0

5,6,8

0.83

 

Zeng

5

1

6,7,8

0.45

LASSO1

Usai

7

Numerous

6

0.83

LASSO2

Usai

7

Numerous

6

0.74

LASSO3

Usai

7

Numerous

6

0.29

MM single SNP

Dashab

5

3

3,6,8

0.73

MM Haplotype

Dashab

5

6

2,6,8

0.61

MM Phylogeny

Dashab

7

5

8

1.07

EMMAX

Fu

3

1

3,5,6,7,8

0.43

  1. (a) 2: Chr2, 81,9cM; 3: Chr2, 93,75cM; 5: Chr3, 15cM; 6: Chr4, 32,2cM; 7: Chr5, 36,3cM; 8:Chr5, 99,2cM.