Table 3 Localization of the simulated QTL depending on the method/model used
From: Comparison of the analyses of the XVth QTLMAS common dataset II: QTL analysis
Chromosome | Â | Chr1 | Chr2 | Chr2 | Chr3 | Chr3 | Chr4 | Chr5 | Chr5 |
|---|---|---|---|---|---|---|---|---|---|
True position | Â | 2.85 | 81.9 | 93.75 | 5 | 15 | 32.2 | 36.6 | 99.2 |
GBLUP | Zeng | 2.95 | 83.0 | Â | 4.75 | Â | 28.2 | no | no |
BayesB | Zeng | 2.85 | 83.0 | 93.7 | 4.75 | 15.8 | 27.9 | no | no |
BayesC | Dashab | 2.75 | 83.1 | 93.4 | 4.8 | 14.8 | 28.3 | 35.1 | no |
BayesCÏ€ | Schurink | 1.6 | 83.1 | 93.4 | 2.9 | (14.8) | (28.3) | 35.1 | no |
BayesCÏ€ | Zeng | 2.75 | 83.0 | 93.6 | 4.6 | 16.6 | no | no | no |
LASSO1 | Usai | 2.90 | 81.9 | 95.8 | 4.8 | 16.1 | 28.0 | 35.1 | no |
LASSO2 | Usai | 2.90 | 81.8 | 94.0 | 4.8 | 16.7 | 34.9 | 36.8 | no |
LASSO3 | Usai | 2.90 | 81.8 | 95.8 | 4.8 | 15.8 | 28 | 36.8 | no |
MM single SNP | Dashab | 3.55 | 82.0 | no | 4.8 | 16.5 | no | 36.2 | no |
MM Haplotype | Dashab | 2.5 | no | 96.0 | 4.8 | 14.9 | no | 35.9 | no |
MM Phylogeny | Dashab | 2.7 | 82.3 | 95.8 | 4.8 | 11.1 | 31.7 | 36 | no |
EMMAX | Fu | 2.9 | 83.1 | no | 4.8 | no | no | no | no |