Table 4 Comparison of QTL effect estimations

True effect¹

12.

2.

2.

2.

2.

4.

1.27²

1.27³

GBLUP

Zeng

4.39

1.92

2.31

1.18

1.34

BayesB

Zeng

2.17

0.68

0.62

0.2

0.15

0.13

BayesC

Dashab

BayesCπ

Schurink

1.92

1.28

0.84

1.24

0.97

Zeng

7.01

0.69

0.66

1.18

0.24

LASSO1

Usai

2.22

0.71

0.48

1.43

0.15

0.2

0.12

LASSO2

Usai

2.09

1.39

2.18

1.67

0.38

0.23

1.42

LASSO3

Usai

2.22

1.01

0.56

1.58

0.29

0.01

0.67

MM single SNP

Dashab

4.19

2.1

2.71

0.65

1.31

MM Haplotype

Dashab

MM Phylogeny

Dashab

EMMAX

Fu

4.39

2.08

2.46