From: Better primer design for metagenomics applications by increasing taxonomic distinguishability
primerID | 5'→3' seq | deg | sDimer | T m range | GC % range | length | nHits |
---|---|---|---|---|---|---|---|
U8F | AGAGTTTGATCCTGGCTCAG | 1 | 4 | 51.78→51.78 | 0.50→0.50 | 20 | 1553 |
U336R | ACTGCTGCSYCCCGTAGGAGTCT | 4 | 4 | 60.62→62.40 | 0.61→0.65 | 22 | 7408 |
U337F | GACTCCTACGGGAGGCWGCAG | 2 | 6 | 60.21→60.21 | 0.67→0.67 | 21 | 7689 |
U518R | GTATTACCGCGGCTGCTGG | 1 | 6 | 55.41→55.41 | 0.63→0.63 | 18 | 8417 |
U533F | GTGCCAGCMGCCGCGGTAA | 2 | 6 | 57.56→59.72 | 0.68→0.74 | 19 | 8929 |
U785F | GGATTAGATACCCTGGTA | 1 | 4 | 45.77→45.77 | 0.44→0.44 | 18 | 8183 |
U805R | GACTACCAGGGTATCTAATC | 1 | 4 | 49.73→49.73 | 0.45→0.45 | 20 | 8171 |
U907R | CCGTCAATTCCTTTRAGTTT | 2 | 4 | 45.63→47.68 | 0.35→0.40 | 20 | 7296 |
U928F | TAAAACTYAAAKGAATTGACGGG | 4 | 4 | 48.14→51.71 | 0.30→0.39 | 23 | 5090 |
U1100F | YAACGAGCGCAACCC | 2 | 4 | 44.67→47.41 | 0.60→0.67 | 15 | 8980 |
U1492R | GGTTACCTTGTTACGACTT | 1 | 3 | 46.77→46.77 | 0.42→0.42 | 19 | 449 |
HMPV1F | GAGTTTGATCCTGGCTCAG | 1 | 4 | 51.09→51.09 | 0.53→0.53 | 20 | 1778 |
HMPV3R | ATTACCGCGGCTGCTGG | 1 | 6 | 51.88→51.88 | 0.65→0.65 | 17 | 8428 |
HMPV3F | CCTACGGGAGGCAGCAG | 1 | 3 | 54.29→54.29 | 0.71→0.71 | 17 | 8735 |
HMV5R | CCCGTCAATTCMTTTRAGT | 4 | 4 | 44.62→48.93 | 0.37→0.47 | 19 | 8533 |
HMPV6F | GYAACGAGCGCAACCC | 2 | 4 | 48.50→51.06 | 0.63→0.69 | 16 | 8507 |
HMPV9R | AAGGAGGTGATCCAGCCGCA | 1 | 4 | 55.88→55.88 | 0.60→0.60 | 20 | 1193 |
N337F | GGAGGCAGCAGTRRGGAAT | 4 | 2 | 51.09→55.41 | 0.53→0.63 | 19 | 8570 |
N775R | CTACCRGGGTATCTAATCC | 2 | 4 | 48.93→51.09 | 0.47→0.53 | 19 | 8427 |
K331F | CCTACGGGNGGCWGCAG | 8 | 6 | 54.29→56.70 | 0.71→0.76 | 17 | 8882 |
K775R | GACTACHVGGGTATCTAATCC | 9 | 10 | 50.45→54.36 | 0.43→0.52 | 21 | 8868 |
S899R | CCGTCAATTYMTTTRAGT | 8 | 4 | 38.93→45.77 | 0.28→0.44 | 18 | 8779 |