Figure 3
From: Adaptive bandwidth kernel density estimation for next-generation sequencing data
Held-out tuning data analysis. Assessment of (A) fixed and (B) adaptive bandwidth schemes on held-out tuning data from the Rad21 dataset across a range of the bandwidth parameter h and the k th -nearest neighbor parameter k. (C) Comparison of five different approaches on held-out test data from 10 ENCODE datasets: (i) fixed-bandwidth Gaussian with h = 16, (ii) fixed-bandwidth Gaussian with h optimized on the tuning set, (iii, iv, v) adaptive-bandwidth Gaussian, triangle, and square kernel functions with k optimized on the tuning set.