Table 1 Results of 2-point linkage analysis with LOD >1.20, ordered by position, using 3 sets of randomly sampled common GWAS SNPs (MAF ≥0.05) from chromosome 3. LOD scores in bold denote values > 1.35 (column 5).
Marker | Position (Mb) | Position (cM) | SNP set | LOD (>1.2) | Class | Gene |
|---|---|---|---|---|---|---|
rs304094 | 4.51744 | 13.9988 | 2 | 1.24 | Intergenic | SUMF1 |
rs17044432 | 6.28766 | 18.6921 | 2 | 1.25 | Intergenic | GRM7 |
rs2213215 | 60.64305 | 82.6846 | 3 | 1.43 | Intronic | FHIT |
rs9816856 | 73.18624 | 100.8683 | 3 | 1.22 | Intergenic | PPP4R2 |
rs6798130 | 74.10858 | 102.7685 | 2 | 1.23 | Intergenic | CNTN3 |
rs7631179 | 82.55674 | 108.3900 | 3 | 1.29 | Intergenic | GBE1 |
rs13093396 | 86.16787 | 108.8700 | 2 | 1.44 | Intergenic | CADM2 |
rs9860570 | 86.28946 | 108.9715 | 1 | 1.24 | Intergenic | CADM2 |
rs1598234 | 94.00416 | 110.3673 | 1 | 1.34 | Intergenic | NSUN3 |
rs11719592 | 100.25710 | 111.9176 | 2 | 1.50 | Intronic | TMEM45A |
rs4928048 | 100.27040 | 111.9277 | 3 | 1.20 | Intronic | TMEM45A |
rs4618204 | 101.28150 | 112.7198 | 3 | 1.25 | Intronic | TRMT10C |
rs16844883 | 108.49870 | 118.6100 | 2 | 1.38 | Intergenic | RETNLB |
rs323629 | 151.92760 | 161.0093 | 3 | 1.25 | Intergenic | LOC401093 |
rs1533913 | 152.70880 | 162.0010 | 3 | 1.63 | Intergenic | P2RY1 |
rs10935963 | 153.68720 | 162.6455 | 1 | 1.41 | Intergenic | ARHGEF26-AS1 |
rs11916399 | 166.34160 | 168.2915 | 1 | 1.39 | Intergenic | ZBBX, MECOM* |
rs6809553 | 181.11490 | 185.8237 | 3 | 1.30 | Intergenic | DNAJC19 |