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Table 1 Discrepancies by family

From: Genotypic discrepancies arising from imputation

 

Sequenced individuals

Nonsequenced individuals

All individuals

Fam_ID

N

D

D/N

N

D

D/N

N

D

D/N

T2DG23

   

32

14678

458.7

32

14678

458.7

T2DG15

   

41

17431

425.1

41

17431

425.1

T2DG14

   

40

15459

386.5

40

15459

386.5

T2DG25

   

33

12714

385.3

33

12714

385.3

T2DG17

20

5287

264.4

22

5639

256.3

42

10926

260.1

T2DG20

20

4977

248.9

16

2943

183.9

36

7920

220.0

T2DG08

25

5461

218.4

43

9112

211.9

68

14573

214.3

T2DG27

17

3686

216.8

18

3074

170.8

35

6760

193.1

T2DG02

43

9108

211.8

43

7922

184.2

86

17030

198.0

T2DG21

19

3915

206.1

16

2630

164.4

35

6545

187.0

T2DG04

38

7245

190.7

25

4155

166.2

63

11400

181.0

T2DG06

39

6976

178.9

25

3174

127.0

64

10150

158.6

T2DG03

38

4675

123.0

39

6943

178.0

77

11618

150.9

T2DG11

29

5132

177.0

6

774

129.0

35

5906

168.7

T2DG10

40

5127

128.2

24

4058

169.1

64

9185

143.5

T2DG16

26

3211

123.5

22

3434

156.1

48

6645

138.4

T2DG47

12

1785

148.8

10

1547

154.7

22

3332

151.5

T2DG09

27

3182

117.9

6

878

146.3

33

4060

123.0

T2DG07

30

3378

112.6

6

867

144.5

36

4245

117.9

T2DG05

40

4349

108.7

28

3058

109.2

68

7407

108.9

  1. Discrepancies in the full comparison single-nucleotide polymorphisms set between GWAS data and GENO data sets, by family, individuals sequenced and individuals imputed. Bold indicates highest discrepancy rate by subsample.
  2. N=number of individuals in the family
  3. D=number of discrepancies observed within the family
  4. D/N=average number of discrepancies observed per family