Table 4 Reduction in MIE rate after employing SVM filter with different thresholds
From: Using Mendelian inheritance errors as quality control criteria in whole genome sequencing data set
Data sets | No. of variants | No. of MIEs | Mean no. of errors per variant | Range of MIEs per variant | No. of variants with MIEs |
|---|---|---|---|---|---|
SVM >2 | 1462201 | 40816 | 0.03 | 0-17 | 25,706(1.76%) |
SVM >2.5 | 1407230 | 33775 | 0.02 | 0-17 | 22,094(1.57%) |
SVM >3 | 1334454 | 26530 | 0.02 | 0-17 | 18,324(1.37%) |
SVM >3.5 | 1236087 | 19662 | 0.02 | 0-10 | 14,511(1.17%) |
SVM >4 | 1107983 | 13438 | 0.01 | 0-7 | 10,629(0.96%) |