BMC Proceedings

Table 3 Conditional concordance rates of hypertensive vs. nonhypertensive individuals (conditional on microarray; SE in parentheses)

From: Evaluating the concordance between sequencing, imputation and microarray genotype calls in the GAW18 data

Sequence genotype		Microarray genotype
		AA	AB	BB	Missing (XX)
AA	Hypertensive	0.998 (0.03)	0.009 (0.07)	0.005 (0.07)	0.51 (0.43)
	Nonhypertensive	0.999 (0.02)	0.010 (0.07)	0.0004 (0.02)	0.51 (0.37)
AB	Hypertensive	0.001 (0.02)	0.990 (0.08)	0.013 (0.07)	0.30 (0.36)
	Nonhypertensive	0.001 (0.02)	0.987 (0.08)	0.011 (0.07)	0.30 (0.26)
BB	Hypertensive	0.0009 (0.03)	0.002 (0.03)	0.982 (0.10)	0.19 (0.33)
	Nonhypertensive	4 × 10⁻⁵ (0.005)	0.002 (0.04)	0.989 (0.07)	018 (0.28)
Missing (XX)	Hypertensive	7 × 10⁻⁵ (0.005)	0.0004 (0.009)	0.0004 (0.01)	0.001 (0.02)
	Nonhypertensive	7 × 10⁻⁵ (0.004)	0.0005 (0.01)	0.0005 (0.01)	0.002 (0.02)

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ISSN: 1753-6561

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