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Table 3 Relationship estimation results for clear outliers in Figure 2 identified by analysis 2

From: PREST-plus identifies pedigree errors and cryptic relatedness in the GAW18 sample using genome-wide SNP data

      

PREST-plus estimated

PLINK estimated

FID1

IID1

FID2

IID2

reltype

commark

p 0

p 1

p 2

p 0

p 1

p 2

9

T2DG0901244

10

T2DG1000566

6

48912

0.8159

0.1735

0.0105

1.0000

0.0000

0.0000

8

T2DG0800497

9

T2DG0901244

6

48957

0.8304

0.1696

0.0000

1.0000

0.0000

0.0000

21

T2DG2100951

25

T2DG2501033

6

48940

0.8174

0.1826

0.0000

0.7713

0.2287

0.0000

4

T2DG0400207

4

T2DG0400247

6

47503

0.6142

0.3673

0.0185

0.7460

0.1972

0.0568

  1. These four pairs of individuals have their estimated IBD distributions clearly deviating from the values expected for unrelated pairs.