Table 2 Results for the region surrounding SNP at 48,040,283 bp using phenotypes as provided (Original) and after randomly redistributing them to individuals (Null).
From: Evaluation of logistic Bayesian LASSO for identifying association with rare haplotypes
SNP(bp) | MAF | Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 | Hap7 | Hap8 | Hap9 | Hap10 | Hap11 | Hap12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48,036,889 | 0.011 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
48,037,078 | 0.363 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
48,038,714 | 0.373 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
48,039,908 | 0.246 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
48,040,283 | 0.025 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
48,040,284 | 0.021 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
48,041,471 | 0.025 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 |
48,042,192 | 0.018 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 |
48,043,058 | 0.331 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
Hap Freq | Â | 0.380 | 0.222 | 0.004 | 0.021 | 0.018 | 0.299 | 0.007 | 0.010 | 0.004 | 0.025 | 0.007 | 0.003 |
Original | Â | NA | 0.02 | 0.00 | 0.30 | 0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.78 | 0.00 | 0.00 |
Null | Â | NA | 0.01 | 0.00 | 0.00 | 0.02 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |