Method | False positive | True QTL | Proportion of genetic variance explained1 | ||||||
---|---|---|---|---|---|---|---|---|---|
T1 | T2 | T3 | T1 | T2 | T3 | T1 | T2 | T3 | |
RR_YD | 9 | 15 | 5 | 8 | 6 | 8 | 0.78 | 0.78 | 0.82 |
RR_YDadj | 7 | 8 | 4 | 5 | 5 | 7 | 0.57 | 0.75 | 0.79 |
GRAMMAR | 0 | 0 | 0 | 2 | 3 | 5 | 0.34 | 0.58 | 0.74 |
RHM20 | 1 | 0 | 0 | 6 | 4 | 7 | 0.61 | 0.61 | 0.80 |
GRM_CG_MT | 2 | 0 | 0 | 3 | 3 | 5 | 0.42 | 0.58 | 0.74 |
GRM_CG_ST | 0 | 0 | 0 | 3 | 3 | 5 | 0.43 | 0.58 | 0.74 |
GRM_CG_YD | 0 | 1 | 0 | 4 | 4 | 5 | 0.54 | 0.63 | 0.74 |
RF_MT | 7 | 3 | 2 | 1 | 2 | 4 | 0.27 | 0.53 | 0.67 |
RF_ST | 5 | 3 | 4 | 1 | 2 | 5 | 0.27 | 0.53 | 0.71 |
RF_YD | 3 | 2 | 0 | 3 | 3 | 5 | 0.42 | 0.59 | 0.71 |
LDLA | 3 | 3 | 1 | 6 | 2 | 5 | 0.61 | 0.53 | 0.60 |
DMU | 3 | 1 | 0 | 6 | 3 | 4 | 0.62 | 0.58 | 0.67 |
SEL-GEN | 5 | 5 | 6 | 4 | 2 | 3 | 0.45 | 0.40 | 0.32 |
LA | 4 | 3 | 1 | 0 | 1 | 2 | 0.00 | 0.02 | 0.29 |
detectable QTL | 13 | 12 | 13 | 0.88 | 0.89 | 0.98 |