Genetic complexity at expression quantitative trait loci

BMC Proceedings

Table 4 Independent eQTL SNP associations by sequential conditioning using p <0.05

Gene		Enumeration of independent signals by association software
		FaST-LMM		SOLAR-MGA
	# SNPs conditioned on	# Significant SNPs	Minimum p value	# Significant SNPs	Minimum p value
TIMM10	0	25	3e-68	24	2e-66
	1	23	2e-87	23	9.9e-86
	2	10	5e-07	10	2e-07
	3	2	0.03	1	0.05
	4	1	0.04	–	–
LR8	0	67	4e-86	65	9e-83
	1	39	2e-24	55	2e-22
	2	47	1-11	63	4e-12
	3	46	0.0001	41	0.0002
	4	37	0.0001	39	0.0001
	5	40	0.0003	41	0.0002
	6	23	0.0004	22	0.0001
	7	14	0.00002	17	0.005
	8	14	0.003	8	0.01
	9*	8	0.002	8	0.02

ISSN: 1753-6561