Table 3 Gene expression data and SNP–SNP interactions
From: Examination of previously identified associations within the Genetic Analysis Workshop 19 data
Gene | Probe | SNP 1 | Chr 1 | SNP 2 | Chr 2 | p value |
|---|---|---|---|---|---|---|
ATP13A1 | GI_9966896-S | rs4284750 | 19 | rs873870 | 19 | 0.000101 |
CSTB | GI_20357564-S | rs9979356 | 21 | rs3761385 | 21 | 0.000747 |
CTSC | GI_22538439-I | rs7930237 | 11 | rs556895 | 11 | 0.020446 |
CTSC | GI_22538438-I | rs7930237 | 11 | rs556895 | 11 | 0.636009 |
FN3KRP | GI_20149679-S | rs898095 | 17 | rs9892064 | 17 | 0.015972 |
GAA | GI_11496988-S | rs11150847 | 17 | rs12602462 | 17 | 0.240101 |
LAX1 | GI_8923315-S | rs1891432 | 1 | rs10900520 | 1 | 0.205055 |
MBNL1 | GI_41281590-S | rs16864367 | 3 | rs13079208 | 3 | 0.01683 |
MBNL1 | GI_41281590-S | rs7710738 | 5 | rs13069559 | 3 | 0.938258 |
MBNL1 | GI_41281590-S | rs218671 | 17 | rs13069559 | 3 | 0.178989 |
MBNL1 | GI_41281590-S | rs11981513 | 7 | rs13069559 | 3 | 0.307821 |
PRMT2 | GI_4504494-S | rs2839372 | 21 | rs11701058 | 21 | 0.4209 |
TRA2A | GI_33620726-S | rs7776572 | 7 | rs11770192 | 7 | 0.51894 |
VASP | GI_4507868-S | rs1264226 | 19 | rs2276470 | 19 | 0.645204 |