Finding potential cis-regulatory loci using allele-specific chromatin accessibility as weights in a kernel-based variance component test

Table 3 Decrease in the association signal when cis-located SNPs are removed from the kernel

Transcript	Gene	SNPs removed from the kernel	Covariance kernel
			Weighted
			h2r	geff	geff_p
		none	0.0000	0.7145	4.55E-18
GI_42544126-I	SF1	2 in SF1	0.0000	0.6809	1.32E-12
		all in transcript region	0.1349	0.1349	2.00E-05

ISSN: 1753-6561