Table 2 Summary statistics of correlation and IQScomparing the imputation with dense markers and sparse markers
From: Imputing rare variants in families using a two-stage approach
Quality measurements | Minimum | Median | Mean | Maximum | SD | |
|---|---|---|---|---|---|---|
Correlation | Masked individuals with GWA | 0.00049 | 0.6983 | 0.5766 | 1 | 0.3714 |
Masked individuals with GWA in LE | 0.00087 | 0.6798 | 0.5708 | 1 | 0.3729 | |
Impute with –cluster option | 0.0000 | 0.6879 | 0.5748 | 1 | 0.3727 | |
IQS | Masked individuals with GWA | −0.04793 | 0.4046 | 0.3758 | 0.9715 | 0.3007 |
Masked individuals with GWA in LE | −0.04758 | 0.3883 | 0.3659 | 0.9682 | 0.2980 | |
Impute with –cluster option | −0.04887 | 0.3989 | 0.3712 | 0.9682 | 0.2995 |