A LASSO penalized regression approach for genome-wide association analyses using related individuals: application to the Genetic Analysis Workshop 19 simulated data

Table 2 Results of the analyses using p value threshold of 1E-04 for the PLINK analyses^a

Method	IC	Significant SNPs		QTLs Discovered			SNPs within 2 kbp of QTL
Method	IC	Mean	SD	TDR	Mean	SD	TDR	Mean	SD
PLINK	–	695.8	287.7	0.135	0.13	0.36	0.735	1.89	1.87
Add	AIC	37.4	17.1	0.005	0.01	0.07	0.120	0.12	0.33
Add	BIC	14.1	5.8	0.000	0.00	0.00	0.015	0.02	0.13
Ind	AIC	63.84	21.0	0.005	0.01	0.07	0.200	0.20	0.47
Ind	BIC	41.2	10.6	0.005	0.01	0.07	0.130	0.13	0.38

ISSN: 1753-6561