Skip to main content
Fig. 2 | BMC Proceedings

Fig. 2

From: Genome-wide QTL and eQTL analyses using Mendel

Fig. 2

Summary of the eQTL analysis. Left: Histogram of the genomic inflation factors λ GC . Right: Top expression-SNP hits from the eQTL analysis. Each dot represents an expression-SNP association that satisfies: genomic inflation factor λ GC  < 1.1, p <5.77 × 10−13, SNP Hardy-Weinberg test (in founders) p >10−8, SNP MAF in 641 individuals >0.01, and the expression probe is annotated in the EXPR_MAP.csv file. Dot size and color vary according to their p values on the log10 scale. Total run time (20,634 expressions vs. 8,338,071 SNPs) on a cluster with 20 parallel jobs was approximately 30 h

Back to article page