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Table 1 Percentage of simulated phenotypes associated with positive control matrices by similarity calculation method

From: A variance component method for integrated pathway analysis of gene expression data

  

Simulated DBP

Q1

Matrix

Average (%)

bhja (%)

corr (%)

dive (%)

ejac (%)

eucl (%)

bhja (%)

corr (%)

dive (%)

ejac (%)

eucl (%)

1

29.6

34.2

65.0

34.0

61.5

36.0

1.0

5.5

3.5

3.5

1.5

2

18.1

23.5

55.0

14.0

50.0

25.0

0.0

3.5

1.5

2.5

0.0

3

13.3

13.2

34.5

18.5

31.5

15.0

1.5

6.5

1.0

5.5

2.0

4

10.6

4.0

35.0

4.5

28.5

8.5

0.5

4.5

0.0

3.5

1.0

5

8.1

4.5

16.0

4.5

14.5

4.5

0.5

4.5

1.5

5.0

0.5

6

6.0

1.0

7.0

3.0

6.0

1.0

1.0

7.0

0.5

4.5

0.5

7

5.2

1.5

7.0

4.5

6.0

2.0

0.5

3.0

1.5

3.0

0.0

8

3.4

0.0

2.5

2.5

2.5

0.5

0.5

3.5

0.0

2.5

0.5

9

2.5

0.0

2.5

2.0

2.5

0.0

1.5

4.0

1.5

4.5

1.5

10

1.0

0.0

0.5

1.0

1.0

0.0

1.0

3.5

1.5

3.0

1.0

  1. bhja Bhjattacharyya distance, corr correlation, dive divergence distance, ejac extended Jaccard distance, eucl euclidean distance