Table 2 The 5 SNPs and corresponding CpGs that were used to simulate change in TG levels between drug treatment in the GAW20 simulated data with their simulated theoretical expected heritabilities and their GWAS and EWAS p values
From: Application of Bayesian networks to GAW20 genetic and blood lipid data
SNP | Chromosome | Position | Heritability | SNP p value | CpG | CpG p value |
|---|---|---|---|---|---|---|
rs9661059 | 1 | 230,556,033 | 0.125 | 1.08 × 10−8 | cg00000363 | 0.0766 |
rs736004 | 6 | 5,067,728 | 0.075 | 0.0164 | cg10480950 | 0.1229 |
rs1012116 | 8 | 89,466,383 | 0.100 | 0.00125 | cg18772399 | 0.7496 |
rs10828412 | 10 | 23,476,515 | 0.025 | 0.000690 | cg00045910 | 0.8427 |
rs4399565 | 17 | 13,407,619 | 0.050 | 0.0123 | cg01242676 | 0.9250 |