Table 1 Top 10 SNPs with the smallest p values as identified by MCPDT
From: Logistic Bayesian LASSO for detecting association combining family and case-control data
SNP | Chr | Position | Allelea | MAF | P value | Block |
|---|---|---|---|---|---|---|
rs10915052 | 1 | 30,479,266 | G/A | 0.0104 | 2.59 × 10− 8 | 1 |
rs1406862 | 1 | 30,483,442 | T/C | 0.0109 | 3.48 × 10−8 | 1 |
rs16833496 | 1 | 30,509,960 | G/A | 0.0110 | 1.80 × 10−7 | 2 |
rs17086804 | 4 | 57,033,788 | T/C | 0.0597 | 1.22 × 10−4 | 3 |
rs2048091 | 8 | 19,003,646 | A/C | 0.3565 | 5.92 × 10−5 | 4 |
rs12281650 | 11 | 69,360,392 | C/T | 0.2665 | 9.48 × 10−5 | 5 |
rs7943255 | 11 | 124,450,756 | G/A | 0.0544 | 1.23 × 10−4 | 6 |
rs8001893 | 13 | 33,120,261 | C/A | 0.0171 | 6.24 × 10−6 | 7 |
rs35625 | 16 | 16,077,067 | T/C | 0.4123 | 1.15 × 10−4 | 8 |
rs966287 | 18 | 27,580,619 | G/C | 0.3285 | 8.95 × 10−5 | 9 |