Logistic Bayesian LASSO for detecting association combining family and case-control data

BMC Proceedings

Table 2 Significant haplotypes identified by eLBL; CI does not include 1 and BF > 2

Block^a	Chr	Gene	Hap^b	Freq	OR	LB^c	UB^c	BF
B1	1	NA	h11110	0.0103	0.2167	0.0482	0.7293	14.88
B3	4	SRP72	h00110011	0.0601	0.5195	0.3137	0.8374	9.66
B4	8	ncRNA	h01000	0.1494	1.6192	1.1460	2.3157	7.36
B6	11	SLC37A2	h111000	0.0361	0.3751	0.1651	0.7630	18.64
B7	13	STARD13	h1000000000	0.0006	77.9239	1.7253	3085.8835	20.70
			h1111111111	0.0164	0.2731	0.0814	0.7502	15.32
B8	16	ABCC1	h0101010	0.1663	0.7062	0.5272	0.9435	2.09

^aThe SNPs contained in the haplotype blocks are as follows: B1: rs10915052 rs2377270 rs2205841 rs1406862 rs12410878; B3: rs6849183 rs11133443 rs17086804 rs11610 rs41476944 rs17086853 rs12649799 rs10015634 B4: rs10104096 rs2048091 rs13266438 rs10088192 rs13262422; B6: rs7943255 rs12289510 rs12276567 rs10893317 rs4936976 rs3808995; B7: rs9563616 rs7985396 rs9591912 rs8001801 rs7993044 rs9315232 rs10507413 rs9569943 rs7328696 rs8001893; B8: rs35621 rs35625 rs4148350 rs4148351 rs35628 rs4148353 rs35629
^b“1” denotes the minor allele and the SNPs in Table 1 are in bold
^cLB (lower bounds) and UB (upper bounds) of the odds ratio (OR), which make up the 95% credible interval (CI)

ISSN: 1753-6561