Skip to main content

Table 1 Associated genes and changes in SD and scorr for highlighted outlier CpG sites

From: Identifying fenofibrate responsive CpG sites

CpG

Chr

Gene

Post SD rank (esta)

Pre SD rank (est)

Post scor rank (est)

Pre scor rank (est)

24,309,769

12

A2ML1

365 (0.27)

351 (0.27)

210 (0.42)

30,906 (0.41)

12,208,638

11

ACTN3

242 (0.28)

290 (0.28)

443 (0.4)

6697 (0.49)

9307883

9

ANAPC2

404 (0.27)

505 (0.25)

314 (0.41)

110,943 (0.31)

4,888,234

1

FCRLA

345 (0.27)

327 (0.27)

281 (0.42)

239,089 (0.21)

16,140,565

3

FHIT

47 (0.31)

95 (0.3)

169 (0.43)

70,600 (0.35)

1,778,345

1

GDAP2

182 (0.29)

318 (0.27)

391 (0.41)

36,074 (0.4)

3,796,003

16

KCTD5

218 (0.29)

245 (0.28)

180 (0.43)

176,434 (0.26)

16,675,926

1

KIAA1804

435 (0.26)

613 (0.24)

395 (0.41)

231,790 (0.22)

5,023,192

2

NDUFA10

38 (0.31)

32 (0.32)

206 (0.42)

153,842 (0.27)

17,040,924

11

OR52M1

63 (0.31)

132 (0.3)

37 (0.47)

35,002 (0.4)

8,210,706

14

SERPINA5

293 (0.28)

347 (0.27)

331 (0.41)

21,063 (0.43)

13,989,295

17

SKA2

108 (0.3)

105 (0.3)

426 (0.4)

38,937 (0.4)

10,890,644

10

TUBAL3

129 (0.3)

98 (0.3)

66 (0.45)

76,987 (0.34)

3,221,390

1

 

274 (0.28)

227 (0.28)

173 (0.43)

90,915 (0.33)

20,086,657

17

 

187 (0.29)

110 (0.3)

51 (0.46)

19,044 (0.44)

22,274,273

6

 

254 (0.28)

200 (0.29)

247 (0.42)

53,745 (0.37)

  1. Sites in bold show a change in outlier status for both scor and SD
  2. aEst refers to the estimate, rather than rank, of SD or scor in that sample