Table 2 Effects of choice of SNPs on estimates of causal SNP location
| Â | Tagging SNPs | Equally spaced SNPs | ||||
|---|---|---|---|---|---|---|
No. SNPs | RMSE (104 bp) | ECR | LCI (105 bp) | RMSE (104 bp) | ECR | LCI (105 bp) |
52 | 12.5 | 96% | 5.6 | 8.4 | 99% | 3.7 |
109 | 6.9 | 97% | 4.1 | 7.7 | 99% | 3.5 |
141 | 10.1 | 93% | 3.6 | 7.3 | 97% | 3.2 |
178 | 5.9 | 100% | 3.7 | 6.0 | 98% | 3.1 |