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Table 2 Effects of choice of SNPs on estimates of causal SNP location

From: Fine-scale linkage disequilibrium mapping: a comparison of coalescent-based and haplotype-clustering-based methods

  Tagging SNPs Equally spaced SNPs
No. SNPs RMSE (104 bp) ECR LCI (105 bp) RMSE (104 bp) ECR LCI (105 bp)
52 12.5 96% 5.6 8.4 99% 3.7
109 6.9 97% 4.1 7.7 99% 3.5
141 10.1 93% 3.6 7.3 97% 3.2
178 5.9 100% 3.7 6.0 98% 3.1