Table 2 Number of expression phenotypes having cis-/trans-/cis and trans-regulators at different p-value thresholds using data sets normalized by three methods (cis regulators are those that mapped within 5 Mb of the target gene)
From: Impact of normalization and filtering on linkage analysis of gene expression data
| Â | Â | RMA | GCRMA | PLIER | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
p-Value | LOD | cis | trans | cis+trans | cis | trans | cis+trans | cis | trans | cis+trans |
3.7*10-5 | 3.4 | 0 | 910 | 5 | 0 | 205 | 1 | 0 | 2527 | 2 |
4.3*10-7 | 5.3 | 0 | 454 | 1 | 0 | 71 | 0 | 0 | 258 | 0 |