Table 2 Number of cis-, cis/trans, and trans-regulated traits for each method (proportion among traits having at least one linkage signal)
From: Impact of gene expression data pre-processing on expression quantitative trait locus mapping
cis | cis/trans | trans | |
|---|---|---|---|
350 variable traits | |||
MAS5 | 7 (19%) | 2 (5%) | 28 (76%) |
GCRMA | 4 (9%) | 1 (2%) | 40 (89%) |
RMA | 3 (8%) | 1 (3%) | 32 (89%) |
100 most variable traits | |||
MAS5 | 1 (50%) | 0 (0%) | 1 (50%) |
GCRMA | 1 (7%) | 0 (0%) | 13 (93%) |
RMA | 1 (14%) | 0 (0%) | 6 (86%) |
100 most heritable traits | |||
MAS5 | 2 (11%) | 3 (17%) | 13 (72%) |
GCRMA | 2 (9.5%) | 2 (9.5%) | 17 (81%) |
RMA | 3 (18%) | 1 (6%) | 13 (76%) |
100 non-expressed traits | |||
MAS5 | 8 (20%) | 6 (15%) | 25 (65%) |
GCRMA | 7 (19%) | 5 (14%) | 24 (67%) |
RMA | 9 (26%) | 2 (6%) | 23 (68%) |