Mapping of trans-acting regulatory factors from microarray data

BMC Proceedings

Table 1 Probe sets with LOD > 3.0

Probe set^a	LOD	Chr^b	cM^c	Linkage	Gene location	ENTREZ gene	UniGene ID	Gene symbol	Group^d
65588_at	9.27	20	62	cis	chr20q11.23	388796	Hs.400876	LOC388796	CV40
219759_at	7.6	5	109	cis	chr5q15	64167	Hs.482910	LRAP	CV70
320_at	5.12	6	59	cis	chr6p21.1	5190	Hs.567243	PEX6	CV40
212509_s_at	4.49	17	113	cis	chr17q25.1	439921	Hs.250723	MXRA7	CV70
205018_s_at	4.49	21	20	trans	chr13q32.1	10150	Hs.125715	MBNL2	CV70
204418_x_at	4.25	1	145	cis	chr1p13.3	2946	Hs.279837	GSTM2	CV40
205027_s_at	4.03	9	98	trans	chr10p11.23	1326	Hs.432453	MAP3K8	CV70
203868_s_at	3.79	21	30	trans	chr1p32-p31	7412	Hs.109225	VCAM1	CV70
204073_s_at	3.77	11	56	trans	chr11q12-q13.1	745	Hs.473109	C11orf9	CV70
208121_s_at	3.57	9	97	trans	chr12p13-p12	5800	Hs.160871	PTPRO	CV70
211317_s_at	3.44	8	74	trans	chr2q33-q34	8837	Hs.390736	CFLAR	random
204015_s_at	3.29	12	122	trans	chr8p12-p11	1846	Hs.417962	DUSP4	random
204908_s_at	3.23	21	29	trans	chr19q13.1-q13.2	602	Hs.31210	BCL3	random

^aProbe sets among the 300 selected to test selection by CV. Annotations were from Netaffx, http://www.affymetrix.com.
^bChromosome of linkage peak
^cCentimorgan distance of linkage peak
^dGroup indicates which CV group this probe set was in (see Methods).

ISSN: 1753-6561