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Table 3 p-Values of X-linked SNPs using PLINK allelic association test, GEE adjusted for sex assuming an additive model, and xMQLS, a two-degrees-of freedom test

From: Testing for genetic association taking into account phenotypic information of relatives

SNP PLINKa GEE xMQLS
RS1025952 1.50 × 10-3 1.33 × 10-4 6.05 × 10-7
RS4557887 1.58 × 10-3 1.38 × 10-4 6.16 × 10-7
RS12688703 1.16 × 10-3 1.47 × 10-4 8.99 × 10-7
RS41345546 8.76 × 10-4 9.34 × 10-4 4.36 × 10-6
RS12010049 4.84 × 10-3 3.15 × 10-4 7.73 × 10-6
RS5913038 1.87 × 10-3 5.66 × 10-4 9.20 × 10-6
RS5913060 2.22 × 10-3 5.90 × 10-4 9.34 × 10-6
RS5912337 2.16 × 10-3 5.83 × 10-4 9.41 × 10-6
RS17003827 2.32 × 10-3 6.13 × 10-4 9.44 × 10-6
RS1021570 2.56 × 10-3 6.38 × 10-4 1.01 × 10-5
  1. aStatistically inappropriate test.