Table 2 Distribution of selected genes and SNPs in each of the two regions and nine gene sets/pathways
From: Pathway-based analysis of a genome-wide case-control association study of rheumatoid arthritis
| Â | MHC region (Chr 6, 29-34 Mba) | Rest of genome | ||||
|---|---|---|---|---|---|---|
Gene sets/pathways | No. genes | %b | #SNPs | No. genes | %a | No. SNPs |
Hsa04612 antigen processing and Presentation | 24 | 42.1 | 5 | 33 | 57.9 | 0 |
Hsa04940 Type I Diabetes Mellitus | 22 | 55.0 | 6 | 18 | 45.0 | 0 |
Wieland hepatitis B-iInduced | 15 | 17.2 | 4 | 72 | 82.8 | 0 |
Ctla4 pathway | 2 | 11.1 | 0 | 16 | 88.9 | 1 |
Ami pathway | 2 | 9.1 | 0 | 20 | 90.9 | 0 |
Csk pathway | 2 | 9.1 | 0 | 20 | 90.9 | 0 |
Sana Ifng endothelial up | 11 | 16.4 | 2 | 56 | 83.6 | 0 |
Th1th2 pathway | 2 | 11.8 | 0 | 15 | 88.2 | 0 |
Inflam pathway | 4 | 14.3 | 2 | 24 | 85.7 | 0 |
Hsa04514 cell adhesion molecule | 20 | 17.4 | 5 | 95 | 82.6 | 1 |