Skip to main content

Table 1 Significant associations detected by GAB algorithm

From: Genome-wide association studies using single-nucleotide polymorphisms versus haplotypes: an empirical comparison with data from the North American Rheumatoid Arthritis Consortium

Chr

Start position

End position

p-value

Include significant SNPsa

Overlap with significant GAM blocksb

1

1,045,729

1,058,627

1.67 × 10-14

Yes

Yes

1

55,680,975

55,682,288

2.42 × 10-8

Yes

No

1

150,433,159

150,471,553

1.26 × 10-8

No

Yes

1

22,244,528

22,251,559

4.01 × 10-10

No

No

3

58,921,915

59,057,595

6.27 × 10-11

Yes

Yes

3

108,502,403

108,548,227

2.28 × 10-11

No

Yes

3

156,354,381

156,381,109

1.26 × 10-7

No

Yes

4

36,082,845

36,105,879

5.76 × 10-8

No

No

5

38,767,613

38,785,799

6.62 × 10-8

No

No

5

127,305,116

127,355,548

2.69 × 10-7

No

No

5

137,669,365

137,669,929

2.67 × 10-8

Yes

No

5

168,125,453

168,128,612

1.54 × 10-7

No

Yes

7

26,122,453

26,143,430

6.70 × 10-9

No

No

7

129,556,365

129,578,739

4.97 × 10-12

Yes

No

7

137,469,416

137,478,601

4.64 × 10-8

No

No

8

20,619,747

20,619,773

4.41 × 10-8

No

Yes

8

22,942,075

22,948,219

7.39 × 10-10

No

No

8

144,734,804

144,746,191

1.31 × 10-8

No

Yes

9

81,662,684

81,666,969

4.29 × 10-8

Yes

Yes

10

48,046,897

48,050,873

2.60 × 10-11

No

No

10

71,263,263

71,264,307

9.28 × 10-11

No

Yes

10

92,582,936

92,663,587

1.05 × 10-37

No

Yes

10

96,750,802

96,788,739

2.66 × 10-11

No

No

10

99,590,357

99,601,703

2.41 × 10-7

No

No

11

44,243,624

44,243,868

2.12 × 10-10

No

No

11

1,274,888

1,313,639

2.20 × 10-9

No

No

12

11,438,799

11,477,909

2.44 × 10-7

No

Yes

13

113,781,019

113,839,177

3.73 × 10-12

Yes

No

14

80,904,425

80,935,179

4.93 × 10-9

No

Yes

14

104,491,260

104,507,267

1.15 × 10-9

No

No

14

29,207,158

29,246,917

2.97 × 10-10

No

No

15

65,048,226

65,074,484

1.42 × 10-12

No

Yes

15

87,225,585

87,243,610

1.71 × 10-12

No

Yes

16

1,478,364

1,484,303

2.01 × 10-8

No

Yes

16

11,827,538

11,924,420

4.24 × 10-10

No

No

16

12,089,203

12,101,855

6.25 × 10-10

No

No

17

67,936,240

67,937,413

6.62 × 10-9

No

Yes

17

17,997,997

18,077,866

2.87 × 10-9

No

No

19

39,820,387

39,827,349

2.35 × 10-8

No

No

19

46,151,081

46,152,461

3.26 × 10-8

No

No

19

51,106,074

51,111,613

8.85 × 10-8

No

No

19

61,351,554

61,371,582

5.88 × 10-11

No

Yes

19

13,193,010

13,196,432

9.92 × 10-11

No

Yes

19

18,085,729

18,093,754

1.928 × 10-7

No

Yes

19

2,051,346

2,074,516

2.47 × 10-7

No

Yes

19

2,957,274

2,966,481

1.90 × 10-11

No

Yes

22

38,301,711

38,309,783

2.62 × 10-7

No

Yes

22

42,547,708

42,605,295

1.11 × 10-13

No

Yes

22

49,370,904

49,400,136

2.93 × 10-8

Yes

Yes

22

28,201,971

28,202,179

8.14 × 10-12

No

No

22

35,868,745

35,875,810

5.28 × 10-8

No

No

  1. aInclude SNPs which are significant in individual SNP association test
  2. bOverlap with blocks which are constructed by four gamete rule and significant in a haplotype association test.