Figure 2
From: Look who is calling: a comparison of genotype calling algorithms
Venn diagram of the SNPs passing sQC after different calling algorithms. SNPs in different groups p1 to p7 passed sQC for different combinations of calling algorithms, e.g., SNPs from group p1 only passed sQC for BRLMM, whereas in group p5 SNPs passed sQC for all three algorithms. In addition, the Venn diagram gives the number of SNPs passing sQC in each calling algorithm. A total of 351,207 SNPs out of 422,655 SNPs passed the sQC for at least one calling algorithm.