Table 2 SNPs and positions of the highest T H scores on each chromosome
From: A genome-wide association scan for rheumatoid arthritis data by Hotelling's T2tests
Chr | SNP | Position | TH (p-value) | χ2 (p-value) |
|---|---|---|---|---|
1 | rs2476601 | 114089610 | 48.88 (2.72 × 10-12) | 50.62 (1.12 × 10-12) |
2 | rs6433309 | 172343658 | 23.37 (1.34 × 10-6) | 22.88 (1.72 × 10-6) |
3 | rs9290452 | 174045236 | 25.01 (5.70 × 10-7) | 25.04 (5.62 × 10-7) |
4 | rs1388021 | 157757048 | 29.12 (6.81 × 10-8) | 28.97 (7.35 × 10-8) |
5 | rs6596147 | 133075674 | 35.82 (2.16 × 10-9) | 36.21 (1.77 × 10-9) |
6 | rs2395175 | 32513004 | 651.76 (9.25 × 10-144) | 534.10 (3.62 × 10-118) |
7 | rs6978820 | 146629802 | 23.69 (1.13 × 10-6) | 23.54 (1.22 × 10-6) |
8 | rs9785133 | 20402898 | 29.44 (5.78 × 10-8) | 30.20 (3.90 × 10-8) |
9 | rs2900180 | 120785936 | 34.21 (4.94 × 10-9) | 33.76 (6.23 × 10-9) |
10 | rs2671692 | 49767825 | 30.61 (3.16 × 10-8) | 30.94 (2.66 × 10-8) |
11 | rs16935797 | 8077876 | 20.72 (5.32 × 10-6) | 20.80 (5.10 × 10-6) |
11 | rs376813 | 8221633 | 19.1 (1.24 × 10-5) | 21.33 (3.87 × 10-6) |
12 | rs1022232 | 53231332 | 23.01 (1.61 × 10-6) | 22.81 (1.79 × 10-6) |
13 | rs1177637 | 41590823 | 20.28 (6.71 × 10-6) | 19.96 (7.91 × 10-6) |
14 | rs12885166 | 92195035 | 25.38 (4.72 × 10-7) | 25.53 (4.36 × 10-7) |
15 | rs12913832 | 26039213 | 22.11 (2.58 × 10-6) | 23.27 (1.41 × 10-6) |
16 | rs1875206 | 9966508 | 23.92 (1.01 × 10-6) | 23.81 (1.06 × 10-6) |
16 | rs2521669 | 26795854 | 23.64 (1.16 × 10-6) | 24.08 (9.24 × 10-7) |
17 | rs9896052 | 70930457 | 23.00 (1.62 × 10-6) | 23.53 (1.23 × 10-6) |
18 | rs12455894 | 26873793 | 26.23 (3.03 × 10-7) | 25.61 (4.18 × 10-7) |
19 | rs8104309 | 36858686 | 26.89 (2.16 × 10-7) | 26.15 (3.16 × 10-7) |
20 | rs1182531 | 57826397 | 34.96 (3.37 × 10-9) | 33.67 (6.53 × 10-9) |
21 | rs1041778 | 22747323 | 22.72 (1.87 × 10-6) | 23.25 (1.42 × 10-6) |
22 | rs713756 | 43118847 | 28.16 (1.12 × 10-7) | 31.04 (2.53 × 10-8) |