| LASSO/PCA approach | LASSO/SNP approach | ||
---|---|---|---|---|
Gene × Gene | Lasso coef (SE) | CI | Lasso coef (SE) | CI |
HLA-B × HLA-DQB1 a | -0.0446 (0.0600) | (-0.162, 0.073) |  |  |
HLA-B × HLA-DRA | 0.0452 (0.0781) | (-0.108, 0.198) |  |  |
HLA-DMB × HLA-DQA2 b | -0.0044 (0.0435) | (-0.090, 0.081) |  |  |
HLA-DPA1 × MICA | 0.0197 (0.0261) | (-0.031, 0.071) |  |  |
HLA-DPB1 × MICA a, b | 0.1047 (0.0601) | (-0.013, 0.223) |  |  |
HLA-DQA2 × TNFRSF21 | -0.0356 (0.0230) | (-0.081, 0.010) |  |  |
HLA-DQB1 × TNF | -0.1848 (0.1073) | (-0.395, 0.026) |  |  |
HLA-DRA × HLA-DRB9 a, b | 0.2334 (0.0817) | (0.073, 0.394)c | -0.3574 (0.0872) | (-0.528, -0.186)c |
HLA-DRA × MICA a, b | -0.1125 (0.0528) | (-0.216, -0.009)c | -0.2665 (0.0826) | (-0.428, -0.104)c |
HLA-DRA × TNF | 0.1214 (0.0933) | (-0.062, 0.304) |  |  |
HLA-DRA × TNFRSF21 | -0.0252 (0.0232) | (-0.071, 0.020) | -0.0078 (0.0465) | (-0.099, 0.083) |
HLA-F × MICD | -0.0042 (0.0435) | (-0.089, 0.081) |  |  |
MICA × MICB a, b | -0.0307 (0.0330) | (-0.095, 0.034) |  |  |
MICA × TNF | 0.0280 (0.0514) | (-0.073, 0.129) |  |  |
MICA × TNFAIP3 | -0.0179 (0.0230) | (-0.063, 0.027) |  |  |
TAP2 × TNF | 0.0202 (0.0354) | (-0.049, 0.090) |  |  |
HLA-DPB1 × TAP2 a |  |  | 0.0372 (0.0812) | (-0.122, 0.196) |
HLA-DQB1 × HLA-DRA a |  |  | -0.0068 (0.0433) | (-0.092, 0.078) |
HLA-DQB1 × MICD |  |  | -0.0316 (0.0417) | (-0.113, 0.050) |
HLA-DRA × TAP2 a |  |  | -0.0715 (0.0565) | (-0.182, 0.039) |
MICA × TAP2 a |  |  | -0.0482 (0.0434) | (-0.133, 0.037) |
MICB × MICD a |  |  | 0.0478 (0.0539) | (-0.058, 0.153) |
MICB × TAP2 a |  |  | 0.0933 (0.0768) | (-0.057, 0.244) |
MICD × TAP2 |  |  | 0.1257 (0.0933) | (-0.057, 0.309) |