Table 1 Top ten ranked SNPs based on logistic regression p-values and RF VI (MDA)
From: Identification of genes and haplotypes that predict rheumatoid arthritis using random forests
SNP (gene) | |
|---|---|
Logistic regression | Original RF |
rs2074488 (HLA-C) | rs2249742 (HLA-C) |
rs9461680 (HLA-C) | rs2523619 (HLA-B) |
rs2476601 (PTPN22) | rs833069 (VEGFA) |
rs2523619 (HLA-B) | rs2501787 (PADI4) |
rs3093662 (TNF) | rs10116271 (C5) |
rs3761847 (TRAF1) | rs2596503 (HLA-B) |
rs2156875 (HLA-B) | rs12685344 (C5) |
rs2395471 (HLA-C) | rs2395471 (HLA-C) |
rs13207315 (HLA-C) | rs3093662 (TNF) |
rs7026551 (C5) | rs2596501 (HLA-B) |