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Table 3 Comparison between supervised and unsupervised methods: GO categories related to the optic fissure closure that are associated to clusters derived from unsupervised (no data labels) and supervised (labeled data) methods. Using labels that are computed directly from the measured data appears to provide more biological meaningful associations than unsupervised methods.

From: Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development

Unsupervised methods

Schroedinger Eigenmaps + WGCNA / D-labels

eye morphogenesis

eye development

eye photoreceptor cell development

eye photoreceptor cell differentiation

photoreceptor cell development

embryonic morphogenesis

morphogenesis of a branching structure

sensory organ development

 

camera type eye morphogenesis

 

retina morphogenesis in camera type eye

 

retinal bipolar neuron differentiation